Basic-Algorithms-of-Bioinformatics Applet Why? Interactive demos helps a lot to understand a problem



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tarix06.10.2018
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BABA

  • Basic-Algorithms-of-Bioinformatics Applet


Why?

  • Interactive demos helps a lot to understand a problem

  • Very few interactive works available on the net

    • only for simple dynamic programming
    • limited parameters
    • really ugly
    • source code rarely available


Goals



Implementation

  • Java 1.2 compatible

  • Applet running on

    • Browser (on the net)
    • Applet viewer
  • Swing + Graphics 2D: nice to see!



Basic layout for other DP algorithms

  • Easy to extend!

    • The four algorithms extends
      • The basic graphic grid class
      • The interface
      • The algorithm execution model
  • published under GPL



Let’s see some action!



Info

  • ~ 8600 lines of code

  • Basic Grid

    • DP Grid
      • NW Grid
        • SW Grid
      • FR Grid
  • Basic DP Algorithm

    • NW Algorithm
      • SW Algorithm
    • Four Russians




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