Basic-Algorithms-of-Bioinformatics Applet Why? Interactive demos helps a lot to understand a problem
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Goals Make algorithms fully understandable and interactive
Let the user play with the parameters
Basic layout for other DP algorithms
Info 8600 lines of code
BABA
Basic-Algorithms-of-Bioinformatics Applet
Why?
Interactive demos helps
a lot to understand a problem
Very few interactive works available on the net
only for simple dynamic programming
limited
parameters
really ugly
source code rarely available
Goals
Make algorithms fully understandable and interactive:
Simple Dynamic Programming Table
Needleman & Wunsch
Smith &
Waterman Local Search
Four Russians
Easy to use
Highlight the important aspects
Let the
user play with the parameters
Implementation
Java 1.2 compatible
Applet running on
Browser (on the net)
Applet viewer
Swing + Graphics 2D: nice to see!
Basic
layout for other DP algorithms
Easy to extend!
The four algorithms extends
The basic graphic grid class
The
interface
The algorithm execution model
published under GPL
Let’s see some action!
Info
~ 8600
lines of code
Basic Grid
DP Grid
NW Grid
SW Grid
FR Grid
Basic DP
Algorithm
NW Algorithm
SW Algorithm
Four Russians
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