Contents
Schrödinger Software Release 2015-2
xiv
13.5.4
Color Ramps ................................................................................................. 327
13.5.4.1
The ramp.res File
............................................................................... 327
13.5.4.2
Color Ramp Files
............................................................................... 327
13.5.5
Column Data in the Project Table ................................................................. 328
13.5.6
Property Families .......................................................................................... 329
13.5.7
Maestro Menus ............................................................................................. 329
13.5.8
Rotamers ...................................................................................................... 334
Chapter 14:
Setting Preferences
............................................................................. 335
14.1
General Preferences
........................................................................................... 336
14.1.1
History........................................................................................................... 336
14.1.2
Directories..................................................................................................... 336
14.1.3
File extensions .............................................................................................. 337
14.1.4
Appearance................................................................................................... 338
14.1.5
Application Fonts .......................................................................................... 338
14.1.6
Panels ........................................................................................................... 339
14.1.7
Quitting Maestro............................................................................................ 339
14.2
Project Preferences
............................................................................................ 340
14.2.1
Opening and Closing Projects ...................................................................... 340
14.2.2
Backups ........................................................................................................ 341
14.2.3
Entry Changes .............................................................................................. 343
14.2.4
Importing Structures ..................................................................................... 343
14.3
Project Table Preferences
.................................................................................. 345
14.3.1
Properties ..................................................................................................... 345
14.3.2
Colors............................................................................................................ 347
14.3.3
Groups .......................................................................................................... 348
14.4
Workspace Preferences
..................................................................................... 348
14.4.1
Picking .......................................................................................................... 348
14.4.2
View Animation ............................................................................................. 349
14.4.3
Translation..................................................................................................... 349
14.4.4
Rotation......................................................................................................... 350
14.4.5
Trackpad........................................................................................................ 350
14.4.6
Transformations ............................................................................................ 350
Contents
Maestro 10.2 User Manual
xv
14.4.7
Dipole Moment.............................................................................................. 351
14.4.8
Clipping Planes ............................................................................................. 351
14.4.9
Fonts ............................................................................................................. 352
14.4.10
Fitting .......................................................................................................... 352
14.4.11
Zooming ...................................................................................................... 353
14.4.12
Depth View.................................................................................................. 354
14.4.13
Changes...................................................................................................... 354
14.4.14
Periodicity.................................................................................................... 355
14.4.15
Crystal Mates .............................................................................................. 355
14.4.16
Graphics...................................................................................................... 355
14.4.17
Sequence Viewer ........................................................................................ 357
14.4.18
Display/Undisplay Atoms ............................................................................ 357
14.5
Feedback Preferences
........................................................................................ 358
14.5.1
Atom.............................................................................................................. 358
14.5.2
Properties ..................................................................................................... 358
14.5.3
Job ................................................................................................................ 359
14.6
Atom/Bond Labels Preferences
........................................................................ 360
14.7
Measurements Preferences
............................................................................... 361
14.8
Non-Bonded Interactions Preferences
............................................................ 362
14.8.1
Criteria .......................................................................................................... 362
14.8.1.1
H-Bonds
............................................................................................ 362
14.8.1.2
Halogen bonds
.................................................................................. 363
14.8.1.3
Contacts
............................................................................................ 364
14.8.2
Display .......................................................................................................... 365
14.9
Surfaces Preferences
......................................................................................... 365
14.9.1
Creation ........................................................................................................ 365
14.9.2
Viewing ......................................................................................................... 366
14.9.3
Performance.................................................................................................. 368
14.10
2D Structure Preferences
................................................................................ 369
14.11
LIgand Detection Preferences
........................................................................ 370