Maestro User Manual Copyright © 2015 Schrödinger, LLC. All rights reserved.
While care has been taken in the preparation of this publication, Schrödinger
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the use of the information contained herein.
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of William L. Jorgensen. DESMOND is a trademark of D. E. Shaw Research, LLC.
Desmond is used with the permission of D. E. Shaw Research. All rights reserved.
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May 2015
Maestro 10.2 User Manual
iii
Contents
Document Conventions
................................................................................................... xix
Chapter 1:
Maestro Overview
........................................................................................ 1
1.1
General Interface Design
......................................................................................... 1
1.1.1
Maestro Windows ............................................................................................... 2
1.
1.2
Mouse Functions................................................................................................. 2
1.1.3
Keyboard Shortcuts and Shortcut Menus ........................................................... 3
1.1.4
File and Directory Selection ................................................................................ 3
1.2
Maestro Workflow
..................................................................................................... 5
1.3
Maestro Projects
........................................................................................................ 6
1.4
Access to Applications
............................................................................................ 7
1.5
Running Jobs
............................................................................................................. 9
1.6
Citing Maestro in Publications
.............................................................................. 10
Chapter 2:
The Maestro Main Window
.................................................................. 11
2.1
Starting Maestro
...................................................................................................... 11
2.1.1
Starting Maestro on a Windows Host................................................................ 11
2.1.2
Starting Maestro on a Mac Host ....................................................................... 12
2.1.3
Starting Maestro on a Linux Host ..................................................................... 12
2.1.4
Choosing a Profile............................................................................................. 13
2.2
The Main Window
.................................................................................................... 14
2.3
The Menu Bar
........................................................................................................... 16
2.4
The Main Window Toolbars
................................................................................... 17
2.4.1
The Project Toolbar ........................................................................................... 20
2.4.2
The Edit Toolbar ................................................................................................ 21
2.4.3
The Workspace Toolbar .................................................................................... 23
2.5
The Status Bar
......................................................................................................... 23
2.6
The Sequence Viewer
............................................................................................. 25
2.7
Shortcut Menus
....................................................................................................... 26