Maestro 10.2 User Manual
451
Index
font
2D structure atom symbol ........................
369
Maestro interface ......................................
325
measurement labels ..................................
361
sequence viewer..........................................
30
Workspace atom labels .............................
360
force fields, hydrogen treatment for................
110
fragment libraries ........................................
82
–
84
Fragment mode, building structures in .............
82
fragments
adding ...................................................
82
–
84
building with...............................................
82
connecting and fusing.................................
97
specifying growth settings for ....................
86
full screen mode..........................................
16
,
36
Function Key Macros panel ............................
397
functional groups,
finding with SMARTS patterns .....................
36
G
gaps
displaying in sequence viewer....................
30
eliminating from sequence .......................
115
Get PDB File dialog box...................................
49
Group By Entry Property panel ......................
208
groups, entry ...................................................
179
copying title to property ...........................
234
creating .............................................
194
,
208
incorporation ..............................................
10
navigating .................................................
196
removing...................................................
194
reordering .................................................
208
selecting entries from .......................
201
,
202
shortcut menu ...................................
189
,
191
sorting .......................................................
212
tiling Workspace by ....................................
70
title............................................................
208
grow bond .................................................
86
,
443
Grow mode, building in ....................................
86
growth settings, specifying ...............................
86
H
halogen bonds
criteria for displaying ...............................
363
defining atom sets for ...............................
252
displaying .................................................
252
help .................................................................
408
Auto-Help.................................................
410
balloon help ..............................................
410
tooltips ......................................................
410
Help panel .......................................................
409
highlights
adding text ................................................
170
deleting .....................................................
169
Highlights button ............................................
168
hydrogen bonds
criteria for .................................................
252
criteria for displaying ...............................
362
defining atom sets for ...............................
252
displaying .................................................
252
displaying for adjustments .......................
100
displaying for local transformation ..........
106
preferences for display .............................
362
selection for
display while adjusting or
transforming ..........................................
365
hydrogen treatment
applying ....................................................
108
force field compatibility ...........................
110
hydrogens
adding .......................................................
108
displaying or hiding..................................
151
hydrophobic and hydrophilic regions,
displaying ....................................................
303
Hydrophobic/philic map panel .......................
303
hydrophobic/philic surfaces....................
302
–
306
I
image quality
JPEG files .................................................
401
surfaces.....................................................
299
images
copying and pasting..................................
402
Ligand Interaction Diagram .....................
275
of coordinate scan plots............................
294
of scatter plots ..........................................
292
of Workspace ............................................
399
Import panel......................................................
42
importing structures ....................................
12
,
41
pausing and resuming.................................
48
included entries ...............................................
183
inclusion..........................................................
443
inclusion state .................................................
183
Install Scripts panel.........................................
386