Maestro User Manual
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- Maestro 10.2 User Manual 453 Index
Maestro 10.2 User Manual 453 Index menu button .............................................. 17 ,
Merge Properties panel ................................... 235
minimizing structures ............................. 107
, 108
molecular representation atoms ........................................................ 142 bonds ........................................................ 142 default ....................................................... 379 Molecular Representation panel ..................... 142 opening ..................................................... 141 Molecular Surface panel ................................. 298 molecular surfaces—see surfaces molecules connecting and fusing................................. 97 drawing ................................................. 87 – 88 finding......................................................... 37
Mopac file format ............................................. 45 mouse functions general .................................................... 2 , 31 Project Table ............................................. 186 Workspace .................................................. 64 mouse, two-button............................................... 3 Move To Group dialog box ............................. 210 Movie Options dialog box .............................. 216 movie, recording from selected entries................................. 216
from sequence of views .............................. 70 moving tiles....................................................... 71 multiple bonds, creating in Draw mode............ 88 multi-structure files, exporting to ..................... 55 Multivariate Ranking panel............................. 215 mutating residues .............................................. 85 N navigation entry groups .............................................. 196
Project Table ............................................. 195
New Color Scheme dialog box ....................... 140
New Plot dialog box........................................ 287
New Property dialog box .................................. 60 NMR spin-spin coupling constants, displaying..................................................... 252
nonbonded interactions defining atom sets for ............................... 252 displaying for adjustments........................ 100 displaying for local transformation .......... 106 displaying when viewing poses ................ 220 marker color, width .................................. 365 preferences ............................................... 362 selection for display while adjusting or transforming .......................................... 365
Non-Bonded Interactions panel ...................... 251
O option menu .................................................... 444
panels
closing .......................................................... 2 docking ................................................. 2 , 339 layout, saving.................................... 317
, 340
partial charge, assigning ......................... 111
, 278
partial occupancies display of atoms with ............................... 153 PDB import color code............................... 50 switching between alternates...................... 28 pasting values into the Project Table .............. 233 PDB atom name assigning................................................... 111
finding atoms by ......................................... 37 PDB database, importing from ......................... 48 PDB files, color scheme used on import........... 50 PDB residue name, assigning ......................... 116 peptide rotations.............................................. 102 perspective, enabling................................. 76 , 394 pi interactions defining atom sets for ............................... 252 displaying ................................................. 252 Pick option menu ............................................ 123 Pick to Label button ........................................ 165 picking ............................................................ 444 audio feedback.......................................... 348 cursor size................................................. 348 Place mode, building in .............................. 84 – 85 plane, aligning atoms to .................................... 66 Plot of One-Coordinate Scan panel ................ 295 Plot of Two-Coordinate Scan panel ................ 296 Plot Settings - One-Coordinate Scan panel .... 295 plots
adding data sets ........................................ 287
aspect ratio................................................ 290
axis display ............................................... 288
axis limits ................................................. 288
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