Maestro 10.2 User Manual
455
Index
Mark .........................................................
227
merging.....................................................
235
pasting values ...........................................
233
plotting......................................................
286
reordering .................................................
246
SD names....................................................
54
selecting entries by ...................................
198
selecting for display..................................
239
sorting by ..................................................
211
Stars ..........................................................
227
units ..........................................................
226
visibility for added entries ........................
345
property family
creating .............................................
241
,
248
deleting .....................................................
243
editing .......................................................
243
hiding properties of ..................................
240
ordering properties by...............................
248
Property Options dialog box ...........................
230
Property Tree panel.........................................
241
Protein Reliability Report panel .....................
267
Protein Reports panel......................................
265
Protein Splicing panel .....................................
276
proteins
active site mapping ...................................
302
aligning .....................................................
265
assigning secondary structure...................
265
atom selection examples...........................
130
capping groups ...........................................
82
displaying as ribbons ................................
143
displaying or hiding backbone .................
151
filtering .....................................................
279
interaction diagram with ligand................
274
mutating residues........................................
85
structure reliability report .........................
267
viewing sequence........................................
16
proximity
coloring residues by....................................
26
selecting atoms by ....................................
128
Proximity dialog box ......................................
129
PyMol, starting from Maestro.........................
404
Python commands
pyrun
......................................................
388
pythonimport
.....................................
388
pythonrun
............................................
388
Python Shell panel ..........................................
389
Q
quality
JPEG images ....................................
399
,
401
protein structure........................................
267
rendering...................................................
156
Quick Highlight button ...................................
169
Quick Torsion .................................................
100
Quit Maestro panel ...........................................
39
quitting Maestro................................................
38
preferences for..........................................
339
R
Ramachandran Plot panel ...............................
271
Rapid Torsion Scan panel ...............................
273
reference structure, choosing for ePlayer .......
219
Rename Property panel...................................
237
Reorder Properties dialog box ........................
247
replacing text...................................................
196
residues
alternate positions.......................................
50
assigning name .........................................
116
assigning number to atoms .......................
116
coloring by proximity.................................
26
finding ........................................................
36
in Ligand Interaction Diagram .................
275
mutating......................................................
85
numbering...................................................
87
one-letter names .......................................
360
partial occupancy........................................
50
renumbering .............................................
115
selecting in the sequence viewer ................
25
stepping through in Workspace ..................
37
zooming in on.............................................
26
resource files ...................................................
324
color definitions........................................
325
color ramp ................................................
327
color schemes ...........................................
326
location .......................................................
11
visual style resources................................
325
ribbons
color scheme.............................................
144
display options..........................................
145
displaying .................................................
143
style ..........................................................
144
Ribbons panel .................................................
143
opening .....................................................
143