Maestro User Manual
Schrödinger Software Release 2015-2
Yüklə 8,42 Mb. Pdf görüntüsü
|
- Bu səhifədəki naviqasiya:
- Schrödinger Software Release 2015-2 456 Index
Schrödinger Software Release 2015-2 456 Index rings, swapping substituents ............................. 80 rotamers
interaction energies................................... 273
selecting.................................................... 102
Rotamers dialog box ....................................... 103
rotations center for................................................... 106 fixing center for .......................................... 67 local .......................................................... 106 optimizing rendering for speed................. 156 peptide linkages ........................................ 102 preferences for .......................................... 350 resulting from superposition..................... 257 row number, copying to property.................... 234 S Save Image panel ............................................ 400 Scaffold Decomposition for jobname panel ... 263 Scaffold Decomposition panel ........................ 262 scenes .............................................................. 181 Schrödinger contact information .................... 414 Schrödinger web site....................................... 413 scratch entry ........................................................ 7 scratch projects ........................................... 6 , 173 scripts installing ................................................... 385 installing for all users ............................... 386 Python....................................................... 388
searching for text............................................. 196 secondary structure assigning ................................................... 265
finding......................................................... 37 Select by SMARTS panel ............................... 200 Select menu..................................................... 197 selecting atoms................................................ 119 selection state .................................................. 183 sequence viewer ................................................ 16 sequences color in Workspace sequence viewer.......... 30 secondary structure assignment................ 265 sets .................................................................. 259 reading and writing................................... 261 selecting atoms for.................................... 260 Sets panel ........................................................ 260 shortcut keys Project Table panel ................................... 192
Workspace .................................................. 32 shortcut menus ................................................ 445 bond ............................................................ 29 entry.......................................................... 189 entry group ............................................... 191 property .................................................... 188 tiling items.................................................. 29 Workspace .................................................. 27 Workspace selection ................................... 28 Workspace sequence viewer....................... 26 Show Cap button............................................. 167 Show Properties dialog box ............................ 240 side chains, displaying or hiding .................... 151 SMARTS pattern copying from Workspace selection ............ 62 selecting entries that match ...................... 200 smoothing wire bonds..................................... 380 Sort Project Table panel .......................... 212 , 213 Source Structures panel .................................. 264
Spartan file format ............................................ 45 specular reflection........................................... 146 spin-spin coupling constants, displaying ........ 252 spot-centering on an atom................................. 65 spreadsheet exporting data to ......................................... 57 importing data from.................................... 58 properties for export ................................. 239 startup directory .............................................. 445 status bar ..................................................... 15 ,
Step mode, operating ePlayer in ..................... 217
stereo viewing choosing method ................................ 74 ,
inverting synchronization ........................... 75 turning on and off ....................................... 75 stereochemistry inverting.................................................... 103
labeling atoms with ............................ 90 , 163 structural units for selection...................... 17 ,
structures appending to pre-existing files ................... 54 building from fragments ............................. 82 building in Draw mode......................... 87 –
building in Grow mode............................... 86 building in Place mode ......................... 84 – 85 cleaning up ............................................... 108
coloring..................................................... 135
comparing................................................. 254
Yüklə 8,42 Mb. Dostları ilə paylaş:
|