Maestro User Manual
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- Maestro 10.2 User Manual 455 Index
Maestro 10.2 User Manual 455 Index Mark ......................................................... 227 merging..................................................... 235 pasting values ........................................... 233 plotting...................................................... 286 reordering ................................................. 246 SD names.................................................... 54 selecting entries by ................................... 198 selecting for display.................................. 239 sorting by .................................................. 211 Stars .......................................................... 227 units .......................................................... 226 visibility for added entries ........................ 345 property family creating ............................................. 241
, 248
deleting ..................................................... 243
editing ....................................................... 243
hiding properties of .................................. 240
ordering properties by............................... 248
Property Options dialog box ........................... 230
Property Tree panel......................................... 241
Protein Reliability Report panel ..................... 267
Protein Reports panel...................................... 265
Protein Splicing panel ..................................... 276
proteins active site mapping ................................... 302 aligning ..................................................... 265 assigning secondary structure................... 265 atom selection examples........................... 130 capping groups ........................................... 82 displaying as ribbons ................................ 143 displaying or hiding backbone ................. 151 filtering ..................................................... 279 interaction diagram with ligand................ 274 mutating residues........................................ 85 structure reliability report ......................... 267 viewing sequence........................................ 16 proximity coloring residues by.................................... 26 selecting atoms by .................................... 128 Proximity dialog box ...................................... 129 PyMol, starting from Maestro......................... 404 Python commands pyrun ...................................................... 388 pythonimport ..................................... 388
pythonrun ............................................ 388 Python Shell panel .......................................... 389 Q quality
JPEG images .................................... 399
, 401
protein structure........................................ 267
rendering................................................... 156
Quick Highlight button ................................... 169
Quick Torsion ................................................. 100
Quit Maestro panel ........................................... 39 quitting Maestro................................................ 38 preferences for.......................................... 339
Ramachandran Plot panel ............................... 271 Rapid Torsion Scan panel ............................... 273 reference structure, choosing for ePlayer ....... 219 Rename Property panel................................... 237 Reorder Properties dialog box ........................ 247 replacing text................................................... 196 residues
alternate positions....................................... 50 assigning name ......................................... 116 assigning number to atoms ....................... 116 coloring by proximity................................. 26 finding ........................................................ 36 in Ligand Interaction Diagram ................. 275 mutating...................................................... 85 numbering................................................... 87 one-letter names ....................................... 360 partial occupancy........................................ 50 renumbering ............................................. 115 selecting in the sequence viewer ................ 25 stepping through in Workspace .................. 37 zooming in on............................................. 26 resource files ................................................... 324 color definitions........................................ 325 color ramp ................................................ 327 color schemes ........................................... 326 location ....................................................... 11 visual style resources................................ 325 ribbons
color scheme............................................. 144
display options.......................................... 145
displaying ................................................. 143
style .......................................................... 144
Ribbons panel ................................................. 143
opening ..................................................... 143
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