Maestro User Manual
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- Maestro 10.2 User Manual 451 Index
Maestro 10.2 User Manual 451 Index font
2D structure atom symbol ........................ 369
Maestro interface ...................................... 325
measurement labels .................................. 361
sequence viewer.......................................... 30 Workspace atom labels ............................. 360 force fields, hydrogen treatment for................ 110 fragment libraries ........................................ 82 – 84 Fragment mode, building structures in ............. 82 fragments adding ................................................... 82 – 84 building with............................................... 82 connecting and fusing................................. 97 specifying growth settings for .................... 86 full screen mode.......................................... 16 , 36 Function Key Macros panel ............................ 397
functional groups, finding with SMARTS patterns ..................... 36
gaps
displaying in sequence viewer.................... 30 eliminating from sequence ....................... 115 Get PDB File dialog box................................... 49 Group By Entry Property panel ...................... 208 groups, entry ................................................... 179 copying title to property ........................... 234 creating ............................................. 194 ,
incorporation .............................................. 10 navigating ................................................. 196 removing................................................... 194 reordering ................................................. 208 selecting entries from ....................... 201 ,
shortcut menu ................................... 189
, 191
sorting ....................................................... 212
tiling Workspace by .................................... 70 title............................................................ 208 grow bond ................................................. 86 ,
Grow mode, building in .................................... 86 growth settings, specifying ............................... 86 H halogen bonds criteria for displaying ............................... 363
defining atom sets for ............................... 252
displaying ................................................. 252
help ................................................................. 408
Auto-Help................................................. 410
balloon help .............................................. 410
tooltips ...................................................... 410
Help panel ....................................................... 409
highlights adding text ................................................ 170 deleting ..................................................... 169 Highlights button ............................................ 168 hydrogen bonds criteria for ................................................. 252
criteria for displaying ............................... 362
defining atom sets for ............................... 252
displaying ................................................. 252
displaying for adjustments ....................... 100
displaying for local transformation .......... 106
preferences for display ............................. 362
selection for display while adjusting or transforming .......................................... 365 hydrogen treatment applying .................................................... 108
force field compatibility ........................... 110
hydrogens adding ....................................................... 108 displaying or hiding.................................. 151 hydrophobic and hydrophilic regions, displaying .................................................... 303
Hydrophobic/philic map panel ....................... 303
hydrophobic/philic surfaces.................... 302
– 306
I image quality JPEG files ................................................. 401
surfaces..................................................... 299
images copying and pasting.................................. 402 Ligand Interaction Diagram ..................... 275 of coordinate scan plots............................ 294 of scatter plots .......................................... 292 of Workspace ............................................ 399 Import panel...................................................... 42 importing structures .................................... 12 ,
pausing and resuming................................. 48 included entries ............................................... 183 inclusion.......................................................... 443 inclusion state ................................................. 183 Install Scripts panel......................................... 386
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