Maestro User Manual
Yüklə 8,42 Mb. Pdf görüntüsü
|
- Bu səhifədəki naviqasiya:
- Glossary Maestro 10.2 User Manual 445 selection
Glossary Maestro 10.2 User Manual 445 selection—(1) A group of atoms in the Workspace that has been picked or otherwise chosen. The selection is highlighted by markers when the appropriate option is selected. (2) A group of entries in the Project Table. The entries are highlighted in the table.
a panel, such as the sequence viewer in the main window. startup directory—The directory from which Maestro was started, on Linux (or from the command line on Mac). On Windows and Mac, there isn’t a concept of a startup directory for an application, so it is set to the Schrodinger folder in your Documents folder.
perform synchronizations automatically. user profiles directory—the directory (folder) in which Maestro profiles are kept for a specific user. user resources directory—the directory (folder) in which resource files are kept for a specific user.
volume—a set of data points on a three-dimensional grid for a property that is a function of the three spatial coordinates. working directory—see current working directory .
displayed. Linux, Mac: $HOME/.schrodinger/maestrovv/profiles Windows: %APPDATA%\Schrodinger\maestrovv\profiles Linux, Mac: $HOME/.schrodinger Windows: %APPDATA%\Schrodinger Schrödinger Software Release 2015-2 446 Maestro 10.2 User Manual 447 Index Numerics 2D Sketcher dialog box..................................... 89 2D structures displaying in Project Table ............... 185
, 194
exporting images of .................................. 223
exporting to SD file .................................. 223
options for 2D Viewer .............................. 223
Project Table preferences ......................... 369
2D Viewer panel ............................................. 222
A active atom, changing ....................................... 88 Add Definition dialog box .............................. 283 Add Hydrogens - Advanced panel .................. 109 Add Label Fields dialog box........................... 164 Add Property panel ......................................... 228 Adjust panel .................................................... 100 Advanced Transformations panel ................... 105 aliases.............................................................. 394 Align Atoms panel ...................................... 66 ,
alignment of atoms to axis or plane............................. 65 of numbers and text in Project Table ........ 346 of structures to a reference structure ........ 254 alternate positions displaying ........................................... 28 , 153 PDB import color code............................... 50 reading from PDB file ................................ 43 switching between ...................................... 28 transforming atoms with................... 106 , 351 ambient lighting .............................................. 146
ambient occlusion ............................................. 78 angles adjusting ................................................... 101
measuring ................................................. 250
animation ........................................................ 349
Appearance panel Effects tab ................................................. 148 Fog tab ........................................................ 77 Lighting tab .............................................. 146 Materials tab ............................................. 147 Perspective tab ............................................ 76 Stereo tab .................................................... 75 Application Tree panel........................................ 8 ASD ................................................................ 443 ASL ................................................................. 443 Atom and Bond Coloring panel ...................... 134 atom labels adding user text to .................................... 165
appearance ................................................ 360
applying .................................................... 164
color.......................................................... 360
composing ................................................ 162
including descriptions in .......................... 360
moving...................................................... 165
placement ................................................. 360
removing................................................... 164
updating .................................................... 164
Atom Labels panel .......................................... 163
atom selection adding to ........................... 119 ,
, 122
, 123
by property ............................................... 126
by proximity ............................................. 128
examples ................................................... 130
storing and retrieving................................ 131
Atom Selection dialog box ............................. 125
atom types (MacroModel) setting ....................................................... 110 table .......................................................... 424 united, option for use................................ 372 atoms
active, changing .......................................... 88 adding to selection.............. 28 , 119 , 122
, 123
aligning to axis or plane ............................. 65 assigning residue number ......................... 116 changing element........................................ 95 coloring all................................................ 134 coloring with schemes .............................. 135 deleting ..................................................... 117 displaying or undisplaying ....................... 150 dummy.............................................. 117 , 254 finding ........................................................ 36 hydrogen, adding ...................................... 108 labeling ..................................................... 162 molecular representation .......................... 142 moving.................................................. 80 ,
names........................................................ 112
removing from selection........................... 119
retyping....................................................... 95 selecting for measurements ...................... 250 valency violation ........................................ 87 Auto-Help facility ........................................... 410 axes, displaying coordinate............................. 171
Yüklə 8,42 Mb. Dostları ilə paylaş:
|