Maestro User Manual
Schrödinger Software Release 2015-2
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- Schrödinger Software Release 2015-2 458 Index
Schrödinger Software Release 2015-2 458 Index showing....................................................... 19 Style.......................................................... 154 View............................................................ 63 Workspace .................................................. 23 tooltips ............................................................ 338 trackpad............................................................... 3 transformation global .......................................................... 64 local .......................................................... 104 of tiles ......................................................... 71 translations individual atoms ......................................... 88 local .......................................................... 105 optimizing rendering for speed................. 156 resulting from superposition..................... 257 transparency, surface............................... 306 ,
tube representation adjusting width of ..................................... 380 applying .................................................... 142 two-button mouse................................................ 3
undoing
individual operations .................................. 37 using saved state ....................................... 177 using the Undo menu option ...................... 37 units, display of............................................... 226 user profiles directory ..................................... 445 user resources directory .......................... 444 , 445 User Text button.............................................. 165
utility scripts project_append .................................... 439
project_convert .................................. 439 project_create .................................... 439
V valency, violation of .................................... 87 ,
van der Waals surfaces .................................... 301
use for molecular surface generation........ 299
VDW Surface panel ........................................ 301
view definition..................................................... 64 setting coordinate origin ............................. 65 views
exporting..................................................... 70 importing .................................................... 70 naming ........................................................ 69 volume .................................................... 297 , 445 importing .................................................. 306
Volume Color Map Editor panel..................... 314
W warning messages, in PDB conversion ............. 51 windows
docking ......................................................... 2 saving layout............................................. 317 wire representation adjusting width of..................................... 379
applying .................................................... 142
smoothing ................................................. 380
working directory—see current working directory Workspace................................................. 14 ,
adding to the selection.............................. 202
animation of movements .......................... 349
background color.............................. 141
, 393
clearing ..................................................... 204
creating entries from................................. 179
full screen mode ................................... 16 , 36 minimum size ........................................... 353 scratch entry ................................................. 7 shortcut keys............................................... 32 toolbar......................................................... 17 Workspace Style Settings dialog box Color tab ................................................... 158
General tab ............................................... 156
Hydrogens tab .......................................... 159
Representation tab .................................... 157
X X resources, customizing................................ 324 XYZ file format ................................................ 45 Z zero-order bonds ....................................... 80 ,
display of .................................................... 96 splitting entries across .............................. 207 zooming
in the clipping planes window.... 72 , 352 , 353 limit on ..................................................... 353
preferences ............................................... 353
using the sequence viewer .......................... 26
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