1.4.1.22 - PREV/NEXT Toggle
Toggle to proceed to previous or next entry on a multi-entry CIF or FDAT file.
1.4.1.23 - DECORATION Toggle
The boundary information (title, rotation angles and messages) may be switched (on/off) by
clicking on Decoration.
1.4.1.24 - PLOT copy to META File
A copy of the current artwork on the Image Canvas can be written to a meta-file (Default:
EncapsulatedPostScript).
The meta-file can be:
- sent to a (PostScript) printer
- pasted into a word processor text
- converted into yet another format.
The ImagineMagic program 'convert' will convert, among others, PostScript into GIF.
e.g. convert -rotate 90 sucrose.ps sucrose.gif
The resulting GIF may be inspected with either the 'display' or the 'xv' utility. (e.g.
display sucrose.gif).
Clicking in the left box will generate a black-and-white copy suitable for black-and-white
laser printers.
A click on the right box will generate a color copy suitable for color printers.
The code of this file may be either
- Encapsulated PostScript,
- HP-GL
The default setting (EPS) may be changed either from the main PLATON menu or with the
keyboard instruction:
SET META PS or SET META HPGL
1.4.1.25 - PLUTON & END BUTTONS
Clicking on the PLUTON button provides a direct pathway to PLUTON sporting the same
connectivity and orientation etc. Return to main PLATON menu with 'END'.
1.4.2 – PLUTON SUB-MENU #0 – Main Options
1.4.2.2 - Mono/Stereo Toggle and Options
Clickable Mono/Stereo Options in the Button-boxes (left to right):
1. Red-Green stereo
2. Red-Blue Stereo
3. Juxtaposition Stereo
4. Small Juxtaposition Stereo
Also a toggle from stereo to mono display.
The
corresponding
keyboard instructions are:
(3.5.43) - MONO (PERSP d[0])
(3.6.71) - STEREO (SMALL) (RG/GR/RB/BR/CROSSED) (PERSP d[60])
1.4.2.3 - H-Atoms Toggle
Toggle that allows for an easy inclusion or exclusion of hydrogen atoms in/from the
PLUTON style drawing. The click position determines whether all H-atoms, C-H atoms or
Donor-H atoms are effected.
The corresponding keyboard instructions are:
(IN/EX)CLUDE H,
(IN/EX)CLUDE CH and
(IN/EX)CLUDE DH
1.4.2.4 - SOLID STYLE
Clicking on this button produces a drawing style that is similar to the original PLUTO
program solid-style. The click position determines the radius of the circles representing the
atoms as a fraction of the associated covalent radius. Fractions from left to right are: 0.5,
0.4, 0.3, 0.2, 0.1. Alternatively, identical results (radius fraction = 0.3) may be obtained
with keyboard instructions:
SET PAR 351 0.3
SOLID
1.4.2.5 - ROD STYLE
Default settings of the ROD style give thicker than usual bonds (i.e. those used in the
SOLID style). The ROD-style brings out the three-dimensional character of molecules more
clearly.
1.4.2.6 - CPK STYLE
CPK style plot with van der Waals radii assigned to atoms. Optionally, a wireframe is
included by clicking in the right box.
1.4.2.7 - STRAW STYLE
STRAW style plot with small atomic radii assigned to atoms.
1.4.2.8 - STICK STYLE
This option provides a fast 'bonds-only' plotting style.
1.4.2.9 - BLACK-AND-WHITE COLOR
Black-and-White Color in PLUTON
Three distinguishing options for plot-items using black-and-white colors are available:
1. BWC global
2. BWC atom-types
3. BWC residues
4. BWC ARU's
The associated patterns may be combined with the 'COLOR' options.
Current BWC & COLOR setting may be inspected with the ListTypes and ListARU
instructions from the PLUTON/GeomTy sub-menu or with the keyboard instructions LIST
TYPES and LIST BONDS.
1 - BWC Global
Global pattern setting can be achieved either via the manu item from the PLUTON/Style
menu or as a sub-keyword on the style instruction.
Example: SOLID GLOBE
2 - BWC Atom-Types
When active, atoms are displayed with an atom-type dependent pattern.
The default patterns can be customized with the BWC TYPE instruction or the SelPattern
function on the PLUTON/Style menu.
3 - BWC Residue Types
Selection of the menu option res will assign a distinguishing pattern to each residue type
(i.e. isolated species in the structure).
The default setting may be changed with an ARU instruction:
Example (resd #2):
4 - BWC ARU-Types
Selection of the menu option ARU will assign a distinguishing pattern to each ARU.
Default settings may be changed with an ARU instruction:
Example: ARU GLOBE 2556.01
1.4.2.10 - VIEW OPTIONS
Clicking on one of the five pre-programmed boxes corresponds to the following instructions
and start orientations.
From left to right:
1. VIEW UNIT - Default orientation (XROT = 0, YROT = 0, ZROT = 0)
2. VIEW MIN - Minimum overlap orientation
3. VIEW XO - View down XO
4. VIEW YO - View down YO
5. VIEW ZO - View down ZO
1.4.2.11 – NoDisorder Toggle
(No)Disorder Display Toggle. Left clicking shows the major disorder form and a right click
the minor disorder form.
1.4.2.12 - LABEL SIZE
The character size of the labels can be changed by clicking in the appropriate box.
1.4.2.13 – UNITCELL Toggle
ON/OFF Toggle for Unit Cell outline display.
Associated keyboard instruction:
UNITCELL (OFF/ON) (rbo nli)
1.4.2.14 – Select Residue(s) for Display
This button contains NRES (= number of residues) + 1 clickable boxes. By default, all
residues are shown. This corresponds to the leftmost click position. The other click positions
bring up individual residues. The number of the residue displayed is shown on the drawing.
The number 0 indicates that all residues are shown. Alternatively, residue #10 will be
displayed with the keyboard instruction RESD 10.
1.4.2.15 - JOIN HBONDS
Clicking in the left box will expand the ARU-list with hydrogen bonded (O-H..X, N-H..X
etc) ARU's connected to the unique set. Clicking in the right box will search for H-bonds
including C-H..X contacts.
1.4.2.16 – PACK RANGE
A list of ARU's is assembled with their centers of gravity inside the box with a size defined
by the click position.
The corresponding full keyboard instruction is:
PACK (RANGE xmin xmax ymin ymax zmin zmax (atom-name))
1.4.2.17 - LABEL ATOMS TOGGLE
Global atom labeling toggle. Clicking on the right box will also include H-atoms in the
labeling.
1.4.2.18 – CROTY - Continuous Rotation About Y axis
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