Maestro User Manual
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- Maestro 10.2 User Manual 449 Index
Maestro 10.2 User Manual 449 Index Command Script Editor panel......................... 391 command scripts ..................................... 390 – 394 constructing .............................................. 391
customizing Maestro with ........................ 393
running with ePlayer ................................ 219
commands, Maestro .......................................... 38 configuration files Maestro main menu bar ............................ 329
Project Table ............................................. 328
property family ......................................... 329
Connect & Fuse panel....................................... 98 Connolly surface ............................................. 299 contacts
criteria for ................................................. 252
criteria for displaying ............................... 364
defining atom sets for ............................... 252
displaying ................................................. 252
displaying for adjustments........................ 100
displaying for local transformation .......... 106
selection for display while adjusting or transforming .......................................... 365 Continuous mode, operating ePlayer in .......... 217 conventions, document..................................... xix converting file formats using Babel .................. 45 coordinate axes, displaying in Workspace ...... 171 coordinate scans, displaying results of ........... 292 coordinate system ............................................. 64 coordinates, updating .................................. 64 , 66 Copy Property panel ....................................... 234
copy-and-paste ................................................ 233
CPK representation applying .................................................... 142 as van der Waals surface........................... 301 modifying ................................................. 381 crystal mates ................................................... 152 current working directory ............................... 443 customization perspective .................................................. 76 stereo viewing............................................. 74 toolbars ....................................................... 18 visual style resources................................ 325 with command scripts............................... 393 Customize Menus panel.................................. 318 Customize Mouse Actions panel .................... 321 Customize Profiles panel ................................ 324 Customize Toolbars panel................................. 18
decimal places displayed setting for measurements.......................... 361
setting for properties......................... 236
, 346
Delete button................................................... 167
Delete Properties panel ................................... 238
depth perception clipping....................................................... 78 fog............................................................... 77 for atoms................................................... 143 perspective.................................................. 76 stereo viewing............................................. 74 dihedrals adjusting ................................................... 101
measuring ................................................. 250
dipole moment ........................................ 171
, 351
directories changing ....................................................... 9 current working .............................. 9 , 11 , 443
file export.............................................. 53 , 57 file import ................................................... 45 installation resources ................................ 324 job............................................................. 443 launch ................................................. 11 , 444 Maestro resources..................................... 324
Maestro user resources ............................. 324
profile ....................................................... 444
startup ....................................................... 445
working..................................................... 443
Display/Undisplay Atoms panel ..................... 151
distances, measuring ....................................... 250
double bonds, changing between cis and trans ................... 104 Draw mode........................................................ 87 dummy atoms.................................................. 117 defining for measurements ....................... 254 MacroModel atom type .................... 426 ,
duplicate ligands, eliminating ......................... 283
E E notation........................................................ 236 Edit Color Scheme dialog box ........................ 139 electrostatic potential mapping to a surface................................. 313
surface color scheme ................................ 312
Electrostatic Potential Surface panel .............. 301
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