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ATOM Software Admin Manual



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ATOM Software Admin Manual 

 

Admin Set-Up 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

60 



User Uploads and Uploaded Document column descriptions 

Documents  and files can be added to  your User pages to  keep track of useful  employee  records. 

Files can be organized by year or they can be viewed all at once. 

 

 



 

 

File 

Source file address of uploaded document 

 

Upload Type 

Select the Upload Type as needed.  Upload Types are assigned and cus-

tomized in the Admin> Upload Type section of ATOM  

 

Description 

Descriptions can be added by the user uploading the file as needed. 



Year 

This field will self-populate with the current year but can be altered as 

needed.  You should typically file the upload under the correct year of 

employment for each user. 

 

Created By 

This field will automatically be attached to the user who uploads the doc-

ument 

Modified By 

This field will self-populate if a user modifies an upload with their name 

 

Modified Date 

This filed self-populates with the last modification date of an uploaded 

file. 

File Size (Mb) 

ATOM will record the megabyte size of the file uploaded. 

 

 



ATOM Software Admin Manual 

 

Admin Set-Up 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

61 



Security Information Field Description 

Minutes Allowed to Punch-in Early 

 

The number of minutes an employee is allowed to punch in before their 

scheduled work hours.  For example, if 20 is entered in this field, and the em-

ployee is scheduled to work at 9:00 A.M. and they actually punch in at 8:30 

A.M., then their official login time of record is 8:40 A.M. and not 8:30 A.M.  

 

OTE:  If the field is blank then there is no limit on when the employee can punch in.  If there is a number 

entered in this field and the employee is not on the work schedule they will not be allowed to punch in.  Al-

so if there is a number in this field and they punch in twice for the day there may be an issue on the punch in 

times.  

 

Minutes Allowed to Punch-out Late 

 

The number of minutes an employee is allowed to punch out after their 

scheduled work hours.  For example, if a 10 is entered in this field, and the 

employee is scheduled to work until 5:00 P.M. and they actually punch out at 

5:30 P.M., then their official log out time of record is 5:10 P.M. time and not 

5:30 P.M.   



OTE:  If the field is blank then there is no limit on when the employee can punch out.    

 

 



E-mail Assigned Tasks 

Select this box if you would like your Assigned Tasks to be forwarded to your 

personal email address recorded on your User page in addition to your As-

signed Tasks page.  This is an open option for your users to choose if they 

wish to be notified.   

OTE:  Both the E-mail Assigned Tasks box and the E-mail System Messages box must be checked in addition 

to the email assigned tasks box.  

 

E-mail System Messages  Check this box if you would like your System Messages to be forwarded to 

your personal email address recorded on your User page in addition to your 

Message Center.  This is an open option for your users to choose if they wish 

to be notified. 

Comments 

 

Comments or notes related to the user.  The Administrator is the only one that 

can add and view comments.  The users cannot see them.     

Appointment Notification Type 

 

The user will system message when an appointment is booked for them or 

the entire office depending on the level selected.  This is an open option for 

your users to choose how they wish to be notified. 



Login Screens Allowed 

This will limit the login capability for the user.  For example: Normal login 

(full access to ATOM and client information) or User portal login (Just 

schedules and appointments with no client file access.)   










ATOM Software Admin Manual 

 

Admin Set-Up 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

62 



Employee Hour Edit Permissions   

Selections can be designated that allow the employee will be able to edit 

punch clock hours.  Leaving this option unselected allows only the adminis-

trator to alter hours this employee’s hours.  For example: when an employee 

for gets to punch in they should contact their administrator to change the 

hours.  Other choices can be selected per the level of access you would like 

this employee to have in regards to altering hours.  

Assigned by default for client portal emails 

 

If checked, the user will receive all office portal messages as a system mes-

sage. 

View Total Work Hours in Work Schedule 

 

Selecting this option will allow the user to see a running tally of the hours 

scheduled for each employee on the work schedule.  This option is especial-

ly useful for the scheduler if they are trying to schedule employees within a 

specific weekly limit (40 hours max.) 

Disregard Availability Schedule 

If selected, you will be able to create a work schedule for this user without 

having completed their Availability Schedule.  

Disregard Work schedule   

If selected, you can schedule appointments for this employee without hav-

ing to create a Work Schedule.  

 

Allow to view other user’s tasks 



 

Selecting this option will allow the User to see all the open/closed tasks for 

all employees on the My Assigned Task Page.  This function is typically re-

served for Administrators and Office Managers so they can keep track of all 

assigned tasks for their office in one place.   

  

Allow Account Event Modification  

Selecting this option will allow the user to add, edit and delete Office 

Events.    



Display Lobby Record Count on Header 

Selecting this option will enable the Lobby count to appear in the blue 

header at the top of the page allowing you to track the lobby regardless of 

where you are working from in ATOM.  You may choose to display the 

Lobby counts for all of your offices or just the office you are currently 

signed in with.  This is an option your users can choose to select. 



 


ATOM Software Admin Manual 

 

Admin Set-Up 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

63 



Display Current Appointments on Header 

Selecting this option will enable the user to automatically be alerted when 

their appointment arrives. This is an open option your users can choose to 

select. 


 

 

Display Expanded Client Information Section  

Selecting this option will immediately display the full Client Information 

section of a Client’s file when opened; this option may be more useful for 

Reception. This is an open option for your users to choose how they wish to 

view the file.      

 

Restrict User Access to only his/her Default Site   

Users with multiple offices may wish to limit their employee’s access capa-

bilities to the site (office) which they are assigned.  

Display Collapsed Other Accounts Section 

Selecting this option will collapse the Client’s Other Account section in the 

Client File.  If selected the only years that will display is the last year of 

record and open account years for each Business Type Account.  This is an 

open option for your users to choose how they wish to view the file. 

Display on Client Portal Schedule Appointment Page 

If selected, the User will display on the Client Portal’s appointment sched-

uler 

Last Modified On 

 

Atom will display the date and time the User page was last saved. 

 

Task / Notes Information 

User Tasks/Notes are typically reserved for employee records and Human 

Resource information administrator notes or Employee assignments.  



ATOM Software Admin Manual 

 

Admin Set-Up 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

64 



 

Column Descriptions for Task/Notes Information 

Done 

 Selecting the “Done” option for a task will “Complete” the task.  Users should 

only select this option if there is no need for the task to be assigned to another us-

er for further work.  An assigned task that has been completed should be marked 

as “Done” by the assigned employee to clear it from their Assigned Tasks and 

“Complete” the assignment. 

Task 

User Task Types should be created in the Admin > Task Types section of ATOM 

so they appear in the User’s file.  

 

Note 



 Language pertaining to the assignment or note should be Time Stamped and add-

ed here.   



Creation Date 

The date and time the task was created. 



Due Date 

The date the task is due or assigned.   

ote: In most instances you will keep the same timestamp as the creation date.  If there is a future due date 

added here your assigned user will not see the assignment until the date the task is due in their Assigned 

Tasks unless they “View tasks” by a future date that includes the assignment due date. 

 

 




ATOM Software Admin Manual 

 

Admin Set-Up 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

65 



Completed Date 

The date the task was completed.  This is automatically time stamped when 

“Done” has been selected by the appropriate user. 

Created By 

The user who created the task will be automatically added 



Completed By 

This indicates the person that completed the task by selected “Done.” 



Modified By 

This indicates the last person that modified the task in any way. 



Assigned To 

Tasks can be assigned to one or multiple users by highlighting multiple names by 

using the control key.   

ote

: Yearly Task View - ATOM will default to the most current year’s User Task view but as you may 

have users with multiple years of employment ATOM will organize your user’s tasks by previous years 

which can still be viewed and edited. 

 

Tax/Reporting Information 

Before a User’s name will appear in report drop-down menus, a Begin Date and End Date must be entered 

in the User’s Tax/Reporting Information and be kept current.  From the User screen, go to the 

Tax/Reporting Information section. 

 

 

 




ATOM Software Admin Manual 

 

Admin Set-Up 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

66 



Field Descriptions for Tax Information 

Begin Date 

 

The Begin Date MUST ALWAYS be the first day of the week—Sunday.  Rec-

ord the Begin Date as mm/dd/yyyy. 

End Date 

The End Date MUST ALWAYS be a Sunday.   Record the End Date as 

mm/dd/yyyy.  For example, if Dora T. Explorer’s first day of work was on Jan-

uary 2, 2007, which is a Tuesday, and her last day of work was on February 28, 

2007, which is a Thursday, you would record her Begin and End Date as fol-

lows:   


Begin Date:  12/31/2006 (Sunday at 12:01 A.M.)  End Date:  03/04/2007 (Sunday at 12:01 A.M.) 

OTE:  

Users will not be included in most reports after their recorded End Date.    

 

Federal % Withhold  

Percentage of federal tax the user would like withheld from their gross pay.   

Record percentage as decimals:  For example, record 6% as .06.   

State 

 

The state the user resides in.   



State % Withhold 

 

Percentage of state tax the user would like withheld from their gross pay.  Rec-

ord percentage as decimals:  For example, record 3% as .03.   

City 

 

The City the user lives or works in if city taxes will apply.  IF using a tax ab-

breviation it must be used for all employees subject to that city tax.  For exam-

ple: If employees live in Lansing, MI then all employees need the same city 

designation here.  One should not have “Lansing” noted if the other employees 

use “LN” in the City Tax section.  



City % Withhold 

Percentage of city tax the user would like withheld from their gross pay.  Rec-

ord percentage as decimals:  For example, record 1% as .01. 

Rate Per Hour 

This is the user’s hourly rate of pay. 



Allow Overtime 

If you do not want overtime to calculate you must uncheck the box.  Otherwise, 

overtime is automatically calculated at time and a half for all hourly employees 

that exceed forty hours in a given workweek. 



Adjustment 

This is an adjustment to the user’s gross pay before taxes (FICA, Medicare, 

Federal, State, and City).  To reduce gross pay enter as a negative amount     (-

100) and to increase gross pay enter as a positive amount (100).  The Adjust-

ment field can be used to pay employee bonuses or to pay salaried employees.   

OTE:  

ATOM calculates payroll weekly; therefore, if you want to give an employee a $500 year-end bonus 

and you have a bi-weekly payroll, you should enter $250 as an adjustment amount for that pay period.   

 

401K % Ded 

Percentage of money the user would like withheld from their gross wages for 

retirement.   Record percent as decimals:  For example, record 6% as .06.   



Note 

If needed, enter a note related to the particular pay period. 



 






ATOM Software Admin Manual 

 

Admin Set-Up 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

67 



Billing Rate 

This is the user’s hourly billing rate. Enter a dollar amount here if you want to 

bill your contacts by the hour instead of by the tax form.  By entering a dollar 

amount, the User will be able to log billable through the Punch Clock. 



SEE:  Logging Billable and Non-Billable Hours in the Punch Clock chapter for more information.    

Commission % 

 

This is the User’s commission rate for preparing tax returns.  See Management 

– Commission Report.    

Scheduler’s Commission %  

This is the User’s commission rate for scheduling appointments.  See Manage-

ment – Scheduler’s Commission Report. 

Family 

Add Family or friend information here for emergency contacts for your employees.  

 

 

Field Descriptions for Family Information 



Name 

Name that you would like contacte ing the case of an emergency. 



Relationship 

The relation to the employee. 



Phone 

Contact phone number. 




ATOM Software Admin Manual 

 

Additional Links 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

68 



Additional Links 

Use the Additional Links screen to add a New Internet or Company Link, or to delete/edit an existing In-

ternet or Company Link. Common Internet Links may be the IRS website, state websites, and city web-

sites, etc.  Common Company  Links may be company letterhead, company policy, and company proce-

dures, etc.  Links that are frequently used can also be added as a “Favorite Link” for quick access inside 

the Client’s File. 

ote: 

Additional Link Types are added in the ATOM > Admin > Additional Link Types section 

 

To access the Additional Links Screen: 

 

Go to Admin > Additional Links. 



 

 

Column Descriptions for Additional Links 

Description 

Identifying link information which will also be the “link name” should you choose 

to designate this as a Favorite Link. 

Link 

URL of the direct Internet Link or the source Company Link for forms and docu-

ments. 

Link Type 

Additional Link Type for the document or link address.  The Link Type will help 

you organize your Additional Links. 

Display in Favorite Links 

 

Selecting this option will allow this link to be shown on the Client Information 



Page in the Favorite Links section and is useful for frequently used documents and 

links such as Company Letterhead, IRS or State websites, etc.  



 

 




ATOM Software Admin Manual 

 

Additional Links 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

69 



Ordinal in Favorite Links  

 

If the Display in Favorite Links is selected you should choose in which order a par-



ticular Link will be displayed.  As with all ordinals we suggest using increments of 

5 so future Links can easily be arranged without having to reorder the current list.  

 

 

Adding New Additional Links 



Adding a New Internet Link 

To add a link for an internet site you must enter the complete URL Address.  For example you may wish 

to  link  directly  to  the  IRS  website.    You  would  enter  a  proper  description,  add  the  direct  link 

http://irs.gov

designate a Link Type if applicable, decide if you wish to use it as a Favorite Link and in 

which order  you wish the Favorite Link to appear.   To access the link  you will simply click on the link 

from the Additional Link page or from the Favorite Link section of your Client Page if applicable.   

Adding Company Link 

To  add  a  Company  Link  such  as  your  Fax  Coversheet  or  your  Company  Letterhead  to  the  Additional 

Links screen, you must first upload the document you would like linked to a User’s Upload screen or to 

the Company Upload screen.  Once the document is uploaded, you then link it from the Upload screen to 

the Additional Links screen. 

Save a Document to the Company Upload Screen 

 



From the Company screen: 

 



Click the Upload button 

 



Click the Browse Button 

 



Locate and double-click the document you would like linked 


ATOM Software Admin Manual 

 

Additional Links 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

70 



 

Enter a Description for the document 



 

Click the Save icon 



 

OTE: You cannot link a file folder—it must be a document (MS Word, Excel, etc.) 

 

Link the saved uploaded file to the Additional Links screen

 

 



From the Company Upload screen: 

 



Right-click on the saved uploaded file 

 



Select “Copy Shortcut” from the drop-down menu when hovering over the file name 

 

 

 



 

Open the Additional Links screen 



 

Right-click in an empty Link field  



 

Select Paste from the drop-down menu 



 

Enter a Description for the Link 






ATOM Software Admin Manual 

 

Additional Links 

© 2015 Automated Tax Office Manager, LLC.  All rights reserved 

 

71 



 

Click the Save icon 



 

 

To edit or delete a Company Link, select the Edit or Delete Icons.  To view a Company Link simply click 



on the link 

 

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